CDlib
Overview
Goals
EU H2020
Installing CDlib
Optional Dependencies
PyPi package
Advanced
Optional Dependencies (Conda package)
Quick Start
Tutorial
FAQ
API Guide
Community Objects
Node Clustering
Fuzzy Node Clustering
Attributed Node Clustering
Biparite Node Clustering
Edge Clustering
Temporal Clustering
Static Community Discovery
Node Clustering
Edge Clustering
Ensemble Methods
Dynamic Community Discovery
Instant Optimal
Temporal Trade-Off
Community Events and LifeCycle
LifeCycle Object
Clustering with Explicit LifeCycle
Clustering without Explicit LifeCycle
Analyzing Events and Flows
Visualizing Events and Flows
Validating Flows
Evaluation and Benchmarking
Internal Evaluation: Fitness scores
External Evaluation: Partition Comparisons
Synthetic Benchmarks
Networks With Annotated Communities
Validate CD Algorithms Rankings
Ranking by Fitness Scores
Ranking by Clustering Similarity
Visual Analytics
Network Visualization
Analytics plots
Dynamic Community Events plots
Input-Output
Community I/O
Community Events I/O
Utilities
Graph Transformation
Identifier mapping
Bibliography
Algorithms
Evaluation measures
Researches using CDlib
CDlib
Index
Edit on GitHub
Index
_
|
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
|
X
|
Z
_
__init__() (cdlib.ensemble.BoolParameter method)
(cdlib.ensemble.Parameter method)
(cdlib.evaluation.FitnessResult method)
(cdlib.evaluation.MatchingResult method)
A
add_clustering() (cdlib.TemporalClustering method)
add_matching() (cdlib.TemporalClustering method)
adjusted_mutual_information() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
adjusted_rand_index() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
agdl() (in module cdlib.algorithms)
all_flows_null() (in module cdlib.lifecycles)
analyze_flow() (cdlib.LifeCycle method)
analyze_flows() (cdlib.LifeCycle method)
angel() (in module cdlib.algorithms)
aslpaw() (in module cdlib.algorithms)
async_fluid() (in module cdlib.algorithms)
AttrNodeClustering (class in cdlib)
available_ground_truths() (in module cdlib.datasets)
available_networks() (in module cdlib.datasets)
average_internal_degree() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
avg_distance() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
avg_embeddedness() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
avg_odf() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
avg_transitivity() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
B
bayan() (in module cdlib.algorithms)
belief() (in module cdlib.algorithms)
bimlpa() (in module cdlib.algorithms)
BiNodeClustering (class in cdlib)
bonferroni_post_hoc() (cdlib.evaluation.ComparisonRanking method)
(cdlib.evaluation.FitnessRanking method)
BoolParameter (class in cdlib.ensemble)
C
cdlib.algorithms
module
,
[1]
,
[2]
cdlib.benchmark
module
cdlib.datasets
module
cdlib.ensemble
module
cdlib.evaluation
module
,
[1]
,
[2]
cdlib.lifecycles
module
cdlib.readwrite
module
cdlib.utils
module
cdlib.viz
module
classification_error() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
clustering_stability_trend() (cdlib.TemporalClustering method)
coach() (in module cdlib.algorithms)
ComparisonRanking (class in cdlib.evaluation)
compute_events() (cdlib.LifeCycle method)
compute_events_from_explicit_matching() (cdlib.LifeCycle method)
compute_events_with_custom_matching() (cdlib.LifeCycle method)
condor() (in module cdlib.algorithms)
conductance() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
conga() (in module cdlib.algorithms)
congo() (in module cdlib.algorithms)
convert_graph_formats() (in module cdlib.utils)
core_expansion() (in module cdlib.algorithms)
cpm() (in module cdlib.algorithms)
CPM_Bipartite() (in module cdlib.algorithms)
cut_ratio() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
czekanowski_index() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
D
dcs() (in module cdlib.algorithms)
demon() (in module cdlib.algorithms)
der() (in module cdlib.algorithms)
dice_index() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
dpclus() (in module cdlib.algorithms)
E
ebgc() (in module cdlib.algorithms)
ecs() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
EdgeClustering (class in cdlib)
edges_inside() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
ego_networks() (in module cdlib.algorithms)
eigenvector() (in module cdlib.algorithms)
em() (in module cdlib.algorithms)
endntm() (in module cdlib.algorithms)
erdos_renyi_modularity() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
eva() (in module cdlib.algorithms)
expansion() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
F
f1() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
fetch_ground_truth_data() (in module cdlib.datasets)
fetch_network_data() (in module cdlib.datasets)
fetch_network_ground_truth() (in module cdlib.datasets)
FitnessRanking (class in cdlib.evaluation)
FitnessResult (class in cdlib.evaluation)
flake_odf() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
flow_null() (in module cdlib.lifecycles)
fowlkes_mallows_index() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
fraction_over_median_degree() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
frc_fgsn() (in module cdlib.algorithms)
friedman_ranking() (cdlib.evaluation.ComparisonRanking method)
(cdlib.evaluation.FitnessRanking method)
FuzzyNodeClustering (class in cdlib)
G
ga() (in module cdlib.algorithms)
gdmp2() (in module cdlib.algorithms)
geometric_accuracy() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
get_attribute() (cdlib.LifeCycle method)
get_clustering_at() (cdlib.TemporalClustering method)
get_community() (cdlib.TemporalClustering method)
get_description() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.EdgeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
get_event() (cdlib.LifeCycle method)
get_event_types() (cdlib.LifeCycle method)
get_events() (cdlib.LifeCycle method)
get_explicit_community_match() (cdlib.TemporalClustering method)
get_observation_ids() (cdlib.TemporalClustering method)
girvan_newman() (in module cdlib.algorithms)
graph_entropy() (in module cdlib.algorithms)
greedy_modularity() (in module cdlib.algorithms)
grid_execution() (in module cdlib.ensemble)
grid_search() (in module cdlib.ensemble)
GRP() (in module cdlib.benchmark)
H
has_explicit_match() (cdlib.TemporalClustering method)
head_tail() (in module cdlib.algorithms)
hierarchical_link_community() (in module cdlib.algorithms)
hub_dominance() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
I
ilouvain() (in module cdlib.algorithms)
infomap() (in module cdlib.algorithms)
infomap_bipartite() (in module cdlib.algorithms)
internal_edge_density() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
ipca() (in module cdlib.algorithms)
J
jaccard_index() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
K
kclique() (in module cdlib.algorithms)
kcut() (in module cdlib.algorithms)
L
label_propagation() (in module cdlib.algorithms)
lais2() (in module cdlib.algorithms)
leiden() (in module cdlib.algorithms)
lemon() (in module cdlib.algorithms)
lfm() (in module cdlib.algorithms)
LFR() (in module cdlib.benchmark)
LifeCycle (class in cdlib)
link_modularity() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
louvain() (in module cdlib.algorithms)
lpam() (in module cdlib.algorithms)
lpanni() (in module cdlib.algorithms)
lswl() (in module cdlib.algorithms)
lswl_plus() (in module cdlib.algorithms)
M
markov_clustering() (in module cdlib.algorithms)
MatchingResult (class in cdlib.evaluation)
max_odf() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
mcode() (in module cdlib.algorithms)
mi() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
mod_m() (in module cdlib.algorithms)
mod_r() (in module cdlib.algorithms)
modularity_density() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
modularity_overlap() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
module
cdlib.algorithms
,
[1]
,
[2]
cdlib.benchmark
cdlib.datasets
cdlib.ensemble
cdlib.evaluation
,
[1]
,
[2]
cdlib.lifecycles
cdlib.readwrite
cdlib.utils
cdlib.viz
multicom() (in module cdlib.algorithms)
N
newman_girvan_modularity() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
nf1() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
node_perception() (in module cdlib.algorithms)
NodeClustering (class in cdlib)
normalized_cut() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
normalized_mutual_information() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
nx_node_integer_mapping() (in module cdlib.utils)
O
omega() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
overlap_quality() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
overlapping_normalized_mutual_information_LFK() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
overlapping_normalized_mutual_information_MGH() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
overlapping_seed_set_expansion() (in module cdlib.algorithms)
P
Parameter (class in cdlib.ensemble)
paris() (in module cdlib.algorithms)
partition_closeness_simple() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
percomvc() (in module cdlib.algorithms)
plot_com_properties_relation() (in module cdlib.viz)
plot_com_stat() (in module cdlib.viz)
plot_community_graph() (in module cdlib.viz)
plot_event_radar() (in module cdlib.viz)
plot_event_radars() (in module cdlib.viz)
plot_flow() (in module cdlib.viz)
plot_network_clusters() (in module cdlib.viz)
plot_network_highlighted_clusters() (in module cdlib.viz)
plot_scoring() (in module cdlib.viz)
plot_sim_matrix() (in module cdlib.viz)
polytree() (cdlib.LifeCycle method)
pool() (in module cdlib.ensemble)
pool_grid_filter() (in module cdlib.ensemble)
PP() (in module cdlib.benchmark)
principled_clustering() (in module cdlib.algorithms)
purity() (cdlib.AttrNodeClustering method)
(in module cdlib.evaluation)
pycombo() (in module cdlib.algorithms)
R
r_spectral_clustering() (in module cdlib.algorithms)
rand_index() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
random_search() (in module cdlib.ensemble)
rank() (cdlib.evaluation.ComparisonRanking method)
(cdlib.evaluation.FitnessRanking method)
rb_pots() (in module cdlib.algorithms)
rber_pots() (in module cdlib.algorithms)
RDyn() (in module cdlib.benchmark)
read_community_csv() (in module cdlib.readwrite)
read_community_from_json_string() (in module cdlib.readwrite)
read_community_json() (in module cdlib.readwrite)
read_lifecycle_json() (in module cdlib.readwrite)
remap_node_communities() (in module cdlib.utils)
ricci_community() (in module cdlib.algorithms)
rmi() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
rogers_tanimoto_index() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
RPG() (in module cdlib.benchmark)
S
sample_expected_sim() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
SBM() (in module cdlib.benchmark)
sbm_dl() (in module cdlib.algorithms)
sbm_dl_nested() (in module cdlib.algorithms)
scaled_density() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
scan() (in module cdlib.algorithms)
set_attribute() (cdlib.LifeCycle method)
siblinarity_antichain() (in module cdlib.algorithms)
significance() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
significance_communities() (in module cdlib.algorithms)
size() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
slpa() (in module cdlib.algorithms)
sorensen_index() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
southwood_index() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
spectral() (in module cdlib.algorithms)
spinglass() (in module cdlib.algorithms)
surprise() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
surprise_communities() (in module cdlib.algorithms)
T
TemporalClustering (class in cdlib)
threshold_clustering() (in module cdlib.algorithms)
tiles() (in module cdlib.algorithms)
to_edge_community_map() (cdlib.EdgeClustering method)
to_json() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.EdgeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.LifeCycle method)
(cdlib.NodeClustering method)
(cdlib.TemporalClustering method)
to_node_community_map() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
topsis() (cdlib.evaluation.ComparisonRanking method)
(cdlib.evaluation.FitnessRanking method)
triangle_participation_ratio() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
typicality_distribution() (in module cdlib.viz)
U
umstmo() (in module cdlib.algorithms)
V
validate_all_flows() (cdlib.LifeCycle method)
validate_flow() (cdlib.LifeCycle method)
variation_of_information() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
W
walkscan() (in module cdlib.algorithms)
walktrap() (in module cdlib.algorithms)
wCommunity() (in module cdlib.algorithms)
write_community_csv() (in module cdlib.readwrite)
write_community_json() (in module cdlib.readwrite)
write_lifecycle_json() (in module cdlib.readwrite)
X
XMark() (in module cdlib.benchmark)
Z
z_modularity() (cdlib.AttrNodeClustering method)
(cdlib.BiNodeClustering method)
(cdlib.FuzzyNodeClustering method)
(cdlib.NodeClustering method)
(in module cdlib.evaluation)
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